J4_8G6W_001

3D structure

PDB id

8G6W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8G6W|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G6W_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1529

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8G6W|1|A|G|115
8G6W|1|A|A|116
8G6W|1|A|G|117
8G6W|1|A|U|118
8G6W|1|A|A|119
8G6W|1|A|A|120
8G6W|1|A|U|121
8G6W|1|A|G|122
*
8G6W|1|A|U|239
8G6W|1|A|G|240
*
8G6W|1|A|C|286
8G6W|1|A|U|287
8G6W|1|A|A|288
8G6W|1|A|G|289
*
8G6W|1|A|C|311
8G6W|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17