J4_8G6Y_003

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8G6Y|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G6Y_003 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.149

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8G6Y|1|a|C|268
8G6Y|1|a|C|269
*
8G6Y|1|a|G|370
8G6Y|1|a|A|371
8G6Y|1|a|G|372
8G6Y|1|a|U|373
8G6Y|1|a|A|374
8G6Y|1|a|G|375
*
8G6Y|1|a|U|399
8G6Y|1|a|G|400
8G6Y|1|a|A|401
8G6Y|1|a|A|402
8G6Y|1|a|U|403
8G6Y|1|a|A|404
8G6Y|1|a|U|405
8G6Y|1|a|G|406
*
8G6Y|1|a|C|421
8G6Y|1|a|A|422
8G6Y|1|a|A|423
8G6Y|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28