J4_8G6Y_008

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

8G6Y|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G6Y_008 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0416

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8G6Y|1|a|U|1313
8G6Y|1|a|C|1314
*
8G6Y|1|a|G|1338
8G6Y|1|a|G|1339
8G6Y|1|a|U|1340
8G6Y|1|a|G|1341
8G6Y|1|a|A|1342
8G6Y|1|a|G|1343
*
8G6Y|1|a|C|1404
8G6Y|1|a|U|1405
*
8G6Y|1|a|A|1597
8G6Y|1|a|A|1598
8G6Y|1|a|U|1599
8G6Y|1|a|C|1600
8G6Y|1|a|G|1601
8G6Y|1|a|U|1602
8G6Y|1|a|A|1603

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L23