J4_8G7Q_001

3D structure

PDB id

8G7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8G7Q|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G7Q_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1184

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8G7Q|1|A|C|268
8G7Q|1|A|C|269
*
8G7Q|1|A|G|370
8G7Q|1|A|A|371
8G7Q|1|A|G|372
8G7Q|1|A|U|373
8G7Q|1|A|A|374
8G7Q|1|A|G|375
*
8G7Q|1|A|U|399
8G7Q|1|A|G|400
8G7Q|1|A|A|401
8G7Q|1|A|A|402
8G7Q|1|A|U|403
8G7Q|1|A|A|404
8G7Q|1|A|U|405
8G7Q|1|A|G|406
*
8G7Q|1|A|C|421
8G7Q|1|A|A|422
8G7Q|1|A|A|423
8G7Q|1|A|G|424

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Z

50S ribosomal protein L28