J4_8G7Q_019
3D structure
- PDB id
- 8G7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- U(4SU)AG*CAG*UUG(G7M)(3AU)CGCUG*CAGCA
- Length
- 22 nucleotides
- Bulged bases
- 8G7Q|1|y|4SU|8, 8G7Q|1|y|3AU|47, 8G7Q|1|y|C|48
- QA status
- Modified nucleotides: 4SU, G7M, 3AU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8G7Q_019 not in the Motif Atlas
- Homologous match to J4_7U2I_014
- Geometric discrepancy: 0.5799
- The information below is about J4_7U2I_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47701.1
- Basepair signature
- cWW-F-F-cWW-F-cWW-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8G7Q|1|y|U|7
8G7Q|1|y|4SU|8
8G7Q|1|y|A|9
8G7Q|1|y|G|10
*
8G7Q|1|y|C|25
8G7Q|1|y|A|26
8G7Q|1|y|G|27
*
8G7Q|1|y|U|43
8G7Q|1|y|U|44
8G7Q|1|y|G|45
8G7Q|1|y|G7M|46
8G7Q|1|y|3AU|47
8G7Q|1|y|C|48
8G7Q|1|y|G|49
8G7Q|1|y|C|50
8G7Q|1|y|U|51
8G7Q|1|y|G|52
*
8G7Q|1|y|C|62
8G7Q|1|y|A|63
8G7Q|1|y|G|64
8G7Q|1|y|C|65
8G7Q|1|y|A|66
Current chains
- Chain y
- Isoleucine tRNA
Nearby chains
- Chain 5
- 50S ribosomal protein L33
- Chain g
- 30S ribosomal protein S7
Coloring options: