J4_8G7R_001

3D structure

PDB id

8G7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8G7R|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G7R_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1142

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8G7R|1|A|C|268
8G7R|1|A|C|269
*
8G7R|1|A|G|370
8G7R|1|A|A|371
8G7R|1|A|G|372
8G7R|1|A|U|373
8G7R|1|A|A|374
8G7R|1|A|G|375
*
8G7R|1|A|U|399
8G7R|1|A|G|400
8G7R|1|A|A|401
8G7R|1|A|A|402
8G7R|1|A|U|403
8G7R|1|A|A|404
8G7R|1|A|U|405
8G7R|1|A|G|406
*
8G7R|1|A|C|421
8G7R|1|A|A|422
8G7R|1|A|A|423
8G7R|1|A|G|424

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Z

50S ribosomal protein L28