J4_8G7R_013

3D structure

PDB id

8G7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8G7R|1|a|C|183, 8G7R|1|a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G7R_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1961

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8G7R|1|a|G|142
8G7R|1|a|A|143
8G7R|1|a|G|144
*
8G7R|1|a|C|178
8G7R|1|a|A|179
8G7R|1|a|U|180
8G7R|1|a|A|181
8G7R|1|a|A|182
8G7R|1|a|C|183
8G7R|1|a|G|184
*
8G7R|1|a|C|193
8G7R|1|a|C|194
8G7R|1|a|A|195
8G7R|1|a|A|196
8G7R|1|a|A|197
8G7R|1|a|G|198
*
8G7R|1|a|U|219
8G7R|1|a|G|220
8G7R|1|a|C|221

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20