J4_8G7S_001

3D structure

PDB id

8G7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8G7S|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G7S_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1134

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8G7S|1|A|C|268
8G7S|1|A|C|269
*
8G7S|1|A|G|370
8G7S|1|A|A|371
8G7S|1|A|G|372
8G7S|1|A|U|373
8G7S|1|A|A|374
8G7S|1|A|G|375
*
8G7S|1|A|U|399
8G7S|1|A|G|400
8G7S|1|A|A|401
8G7S|1|A|A|402
8G7S|1|A|U|403
8G7S|1|A|A|404
8G7S|1|A|U|405
8G7S|1|A|G|406
*
8G7S|1|A|C|421
8G7S|1|A|A|422
8G7S|1|A|A|423
8G7S|1|A|G|424

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Z

50S ribosomal protein L28