J4_8G7S_004

3D structure

PDB id

8G7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

8G7S|1|A|G|1271, 8G7S|1|A|A|1272, 8G7S|1|A|U|1273, 8G7S|1|A|A|1275, 8G7S|1|A|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G7S_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0891

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8G7S|1|A|C|1270
8G7S|1|A|G|1271
8G7S|1|A|A|1272
8G7S|1|A|U|1273
8G7S|1|A|A|1274
8G7S|1|A|A|1275
8G7S|1|A|A|1276
*
8G7S|1|A|U|1294
8G7S|1|A|C|1295
*
8G7S|1|A|G|1645
8G7S|1|A|C|1646
8G7S|1|A|U|1647
8G7S|1|A|U|1648
*
8G7S|1|A|A|2009
8G7S|1|A|G|2010

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L32

Chain P

50S ribosomal protein L17

Chain U

50S ribosomal protein L22