J4_8G7S_012

3D structure

PDB id

8G7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8G7S|1|a|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G7S_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2517

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8G7S|1|a|G|115
8G7S|1|a|A|116
8G7S|1|a|G|117
8G7S|1|a|U|118
8G7S|1|a|A|119
8G7S|1|a|A|120
8G7S|1|a|U|121
8G7S|1|a|G|122
*
8G7S|1|a|U|239
8G7S|1|a|G|240
*
8G7S|1|a|C|286
8G7S|1|a|U|287
8G7S|1|a|A|288
8G7S|1|a|G|289
*
8G7S|1|a|C|311
8G7S|1|a|C|312

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17