J4_8GLP_014

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

G(4SU)GG*CGU*AAG(G7M)UCG*CC

Length

16 nucleotides

Bulged bases

8GLP|1|Pt|4SU|8

QA status

Modified nucleotides: 4SU, G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8GLP_014 not in the Motif Atlas

Homologous match to J4_7VNV_001

Geometric discrepancy: 0.1966

The information below is about J4_7VNV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8GLP|1|Pt|G|7
8GLP|1|Pt|4SU|8
8GLP|1|Pt|G|9
8GLP|1|Pt|G|10
*
8GLP|1|Pt|C|26
8GLP|1|Pt|G|27
8GLP|1|Pt|U|28
*
8GLP|1|Pt|A|44
8GLP|1|Pt|A|45
8GLP|1|Pt|G|46
8GLP|1|Pt|G7M|47
8GLP|1|Pt|U|48
8GLP|1|Pt|C|49
8GLP|1|Pt|G|50
*
8GLP|1|Pt|C|66
8GLP|1|Pt|C|67

Current chains

Chain Pt

P-site tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LI

60S ribosomal protein L10

Chain LJ

60S ribosomal protein L11

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SS

40S ribosomal protein S18

Chain SZ

40S ribosomal protein S25