J4_8HL2_002

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAC*GAUAG*CUAAAG*CGC

Length

17 nucleotides

Bulged bases

8HL2|1|A16S|A|202

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HL2|1|A16S|G|130
8HL2|1|A16S|A|131
8HL2|1|A16S|C|132
*
8HL2|1|A16S|G|166
8HL2|1|A16S|A|167
8HL2|1|A16S|U|168
8HL2|1|A16S|A|169
8HL2|1|A16S|G|170
*
8HL2|1|A16S|C|198
8HL2|1|A16S|U|199
8HL2|1|A16S|A|200
8HL2|1|A16S|A|201
8HL2|1|A16S|A|202
8HL2|1|A16S|G|203
*
8HL2|1|A16S|C|231
8HL2|1|A16S|G|232
8HL2|1|A16S|C|233

Current chains

Chain A16S

16s rRNA (1493-MER)

Nearby chains

Chain AS4E

30S ribosomal protein S4e

Chain AS8E

30S ribosomal protein S8e