J4_8HL2_003

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GCG*CGAAAG*CUGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

8HL2|1|A16S|C|542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HL2|1|A16S|G|541
8HL2|1|A16S|C|542
8HL2|1|A16S|G|543
*
8HL2|1|A16S|C|730
8HL2|1|A16S|G|731
8HL2|1|A16S|A|732
8HL2|1|A16S|A|733
8HL2|1|A16S|A|734
8HL2|1|A16S|G|735
*
8HL2|1|A16S|C|776
8HL2|1|A16S|U|777
8HL2|1|A16S|G|778
8HL2|1|A16S|U|779
8HL2|1|A16S|A|780
8HL2|1|A16S|A|781
8HL2|1|A16S|A|782
8HL2|1|A16S|C|783
8HL2|1|A16S|G|784
8HL2|1|A16S|A|785
8HL2|1|A16S|U|786
8HL2|1|A16S|G|787
*
8HL2|1|A16S|C|849
8HL2|1|A16S|C|850

Current chains

Chain A16S

16s rRNA (1493-MER)

Nearby chains

Chain AS8P

30S ribosomal protein S8

Chain L37A

50S ribosomal protein L37Ae

Chain S11P

30S ribosomal protein S11

Chain S12P

30S ribosomal protein S12

Chain S15P

30S ribosomal protein S15

Chain S17P

30S ribosomal protein S17