J4_8HL2_007
3D structure
- PDB id
- 8HL2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- UU*AGUUAG*CC*GACCGUA
- Length
- 17 nucleotides
- Bulged bases
- 8HL2|1|A23S|U|1485
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8HL2_007 not in the Motif Atlas
- Homologous match to J4_4V9F_005
- Geometric discrepancy: 0.274
- The information below is about J4_4V9F_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.2
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
8HL2|1|A23S|U|1457
8HL2|1|A23S|U|1458
*
8HL2|1|A23S|A|1482
8HL2|1|A23S|G|1483
8HL2|1|A23S|U|1484
8HL2|1|A23S|U|1485
8HL2|1|A23S|A|1486
8HL2|1|A23S|G|1487
*
8HL2|1|A23S|C|1550
8HL2|1|A23S|C|1551
*
8HL2|1|A23S|G|1751
8HL2|1|A23S|A|1752
8HL2|1|A23S|C|1753
8HL2|1|A23S|C|1754
8HL2|1|A23S|G|1755
8HL2|1|A23S|U|1756
8HL2|1|A23S|A|1757
Current chains
- Chain A23S
- 23s rRNA (3000-MER)
Nearby chains
- Chain L19E
- 50S ribosomal protein L19e
- Chain L23P
- 50S ribosomal protein L23
- Chain L29P
- 50S ribosomal protein L29
- Chain L34E
- 50S ribosomal protein L34e
- Chain L39E
- 50S ribosomal protein L39e
Coloring options: