J4_8HL2_013

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AUAG*CAG*CGUGUCCU*AGU

Length

18 nucleotides

Bulged bases

8HL2|1|AETN|G|44, 8HL2|1|AETN|U|45, 8HL2|1|AETN|U|47

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HL2|1|AETN|A|7
8HL2|1|AETN|U|8
8HL2|1|AETN|A|9
8HL2|1|AETN|G|10
*
8HL2|1|AETN|C|25
8HL2|1|AETN|A|26
8HL2|1|AETN|G|27
*
8HL2|1|AETN|C|43
8HL2|1|AETN|G|44
8HL2|1|AETN|U|45
8HL2|1|AETN|G|46
8HL2|1|AETN|U|47
8HL2|1|AETN|C|48
8HL2|1|AETN|C|49
8HL2|1|AETN|U|50
*
8HL2|1|AETN|A|64
8HL2|1|AETN|G|65
8HL2|1|AETN|U|66

Current chains

Chain AETN

tRNA (76-MER)

Nearby chains

Chain AL1P

50S ribosomal protein L1

Chain L44E

50S ribosomal protein L44e