J4_8HL2_014

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAUAG*CAG*CGUGUCC*GUC

Length

18 nucleotides

Bulged bases

8HL2|1|APTN|U|8, 8HL2|1|APTN|U|47, 8HL2|1|APTN|C|48, 8HL2|1|APTN|U|66

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8HL2_014 not in the Motif Atlas

Homologous match to J4_4WJ4_001

Geometric discrepancy: 0.4968

The information below is about J4_4WJ4_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

8HL2|1|APTN|G|6
8HL2|1|APTN|A|7
8HL2|1|APTN|U|8
8HL2|1|APTN|A|9
8HL2|1|APTN|G|10
*
8HL2|1|APTN|C|25
8HL2|1|APTN|A|26
8HL2|1|APTN|G|27
*
8HL2|1|APTN|C|43
8HL2|1|APTN|G|44
8HL2|1|APTN|U|45
8HL2|1|APTN|G|46
8HL2|1|APTN|U|47
8HL2|1|APTN|C|48
8HL2|1|APTN|C|49
*
8HL2|1|APTN|G|65
8HL2|1|APTN|U|66
8HL2|1|APTN|C|67

Current chains

Chain APTN

tRNA (76-MER)

Nearby chains

Chain A23S

Large subunit ribosomal RNA; LSU rRNA

Chain AEFG

Elongation factor 2

Chain L10E

50S ribosomal protein L10e