J4_8HSP_004

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

UUCG*CAC*GUAACA*UA

Length

15 nucleotides

Bulged bases

8HSP|1|V|U|8, 8HSP|1|V|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8HSP_004 not in the Motif Atlas

Homologous match to J4_1IL2_001

Geometric discrepancy: 0.199

The information below is about J4_1IL2_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8HSP|1|V|U|7
8HSP|1|V|U|8
8HSP|1|V|C|9
8HSP|1|V|G|10
*
8HSP|1|V|C|26
8HSP|1|V|A|27
8HSP|1|V|C|28
*
8HSP|1|V|G|44
8HSP|1|V|U|45
8HSP|1|V|A|46
8HSP|1|V|A|47
8HSP|1|V|C|48
8HSP|1|V|A|49
*
8HSP|1|V|U|65
8HSP|1|V|A|66

Current chains

Chain V

P-site tRNA_Glu

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain M

30S ribosomal protein S13

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain l

50S ribosomal protein L16