J4_8HSP_006

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8HSP|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8HSP_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1177

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8HSP|1|a|C|268
8HSP|1|a|C|269
*
8HSP|1|a|G|370
8HSP|1|a|A|371
8HSP|1|a|G|372
8HSP|1|a|U|373
8HSP|1|a|A|374
8HSP|1|a|G|375
*
8HSP|1|a|U|399
8HSP|1|a|G|400
8HSP|1|a|A|401
8HSP|1|a|A|402
8HSP|1|a|U|403
8HSP|1|a|A|404
8HSP|1|a|U|405
8HSP|1|a|G|406
*
8HSP|1|a|C|421
8HSP|1|a|A|422
8HSP|1|a|A|423
8HSP|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28