J4_8HTZ_005

3D structure

PDB id

8HTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUAG*C(M2G)*UGAG(5MC)G*CA

Length

14 nucleotides

Bulged bases

8HTZ|1|X|U|8, 8HTZ|1|X|G|47, 8HTZ|1|X|5MC|48

QA status

Modified nucleotides: M2G, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8HTZ_005 not in the Motif Atlas

Homologous match to J4_4QEI_001

Geometric discrepancy: 0.3405

The information below is about J4_4QEI_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_72305.5

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW

Number of instances in this motif group

6

Unit IDs

8HTZ|1|X|U|7
8HTZ|1|X|U|8
8HTZ|1|X|A|9
8HTZ|1|X|G|10
*
8HTZ|1|X|C|25
8HTZ|1|X|M2G|26
*
8HTZ|1|X|U|44
8HTZ|1|X|G|45
8HTZ|1|X|A|46
8HTZ|1|X|G|47
8HTZ|1|X|5MC|48
8HTZ|1|X|G|49
*
8HTZ|1|X|C|65
8HTZ|1|X|A|66

Current chains

Chain X

A-site tRNA_Ile2

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA