J4_8HTZ_006

3D structure

PDB id

8HTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8HTZ|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8HTZ_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1162

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8HTZ|1|a|C|268
8HTZ|1|a|C|269
*
8HTZ|1|a|G|370
8HTZ|1|a|A|371
8HTZ|1|a|G|372
8HTZ|1|a|U|373
8HTZ|1|a|A|374
8HTZ|1|a|G|375
*
8HTZ|1|a|U|399
8HTZ|1|a|G|400
8HTZ|1|a|A|401
8HTZ|1|a|A|402
8HTZ|1|a|U|403
8HTZ|1|a|A|404
8HTZ|1|a|U|405
8HTZ|1|a|G|406
*
8HTZ|1|a|C|421
8HTZ|1|a|A|422
8HTZ|1|a|A|423
8HTZ|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28