3D structure

PDB id
8HTZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CGAUAAA*UC*GCUU*AG
Length
15 nucleotides
Bulged bases
8HTZ|1|a|G|1271, 8HTZ|1|a|A|1272, 8HTZ|1|a|U|1273, 8HTZ|1|a|U|1647
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8HTZ_009 not in the Motif Atlas
Homologous match to J4_5J7L_021
Geometric discrepancy: 0.0687
The information below is about J4_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_64571.5
Basepair signature
cWW-F-cWW-tSS-cWW-F-cWW
Number of instances in this motif group
4

Unit IDs

8HTZ|1|a|C|1270
8HTZ|1|a|G|1271
8HTZ|1|a|A|1272
8HTZ|1|a|U|1273
8HTZ|1|a|A|1274
8HTZ|1|a|A|1275
8HTZ|1|a|A|1276
*
8HTZ|1|a|U|1294
8HTZ|1|a|C|1295
*
8HTZ|1|a|G|1645
8HTZ|1|a|C|1646
8HTZ|1|a|U|1647
8HTZ|1|a|U|1648
*
8HTZ|1|a|A|2009
8HTZ|1|a|G|2010

Current chains

Chain a
23S rRNA

Nearby chains

Chain m
50S ribosomal protein L17
Chain r
50S ribosomal protein L22
Chain z
50S ribosomal protein L32

Coloring options:


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