J4_8HU1_001

3D structure

PDB id

8HU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8HU1|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8HU1_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2652

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8HU1|1|A|G|115
8HU1|1|A|A|116
8HU1|1|A|G|117
8HU1|1|A|U|118
8HU1|1|A|A|119
8HU1|1|A|A|120
8HU1|1|A|U|121
8HU1|1|A|G|122
*
8HU1|1|A|U|239
8HU1|1|A|G|240
*
8HU1|1|A|C|286
8HU1|1|A|U|287
8HU1|1|A|A|288
8HU1|1|A|G|289
*
8HU1|1|A|C|311
8HU1|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17