J4_8HU1_006

3D structure

PDB id

8HU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8HU1|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8HU1_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.117

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8HU1|1|a|C|268
8HU1|1|a|C|269
*
8HU1|1|a|G|370
8HU1|1|a|A|371
8HU1|1|a|G|372
8HU1|1|a|U|373
8HU1|1|a|A|374
8HU1|1|a|G|375
*
8HU1|1|a|U|399
8HU1|1|a|G|400
8HU1|1|a|A|401
8HU1|1|a|A|402
8HU1|1|a|U|403
8HU1|1|a|A|404
8HU1|1|a|U|405
8HU1|1|a|G|406
*
8HU1|1|a|C|421
8HU1|1|a|A|422
8HU1|1|a|A|423
8HU1|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28