J4_8I9V_001
3D structure
- PDB id
- 8I9V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UC*GAGUCG*CAAAAUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 8I9V|1|C1|U|290
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8I9V_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1886
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8I9V|1|C1|U|112
8I9V|1|C1|C|113
*
8I9V|1|C1|G|259
8I9V|1|C1|A|260
8I9V|1|C1|G|261
8I9V|1|C1|U|262
8I9V|1|C1|C|263
8I9V|1|C1|G|264
*
8I9V|1|C1|C|285
8I9V|1|C1|A|286
8I9V|1|C1|A|287
8I9V|1|C1|A|288
8I9V|1|C1|A|289
8I9V|1|C1|U|290
8I9V|1|C1|G|291
*
8I9V|1|C1|U|308
8I9V|1|C1|A|309
8I9V|1|C1|A|310
8I9V|1|C1|A|311
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CA
- Brix domain-containing protein
- Chain CE
- RNA helicase
- Chain CS
- AdoMet-dependent rRNA methyltransferase SPB1
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- Ribosomal protein L15
- Chain Lh
- dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Li
- 60S ribosomal protein L36
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