J4_8I9Y_003
3D structure
- PDB id
- 8I9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAAUAC*GG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 8I9Y|1|C1|A|1434, 8I9Y|1|C1|U|1437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8I9Y_003 not in the Motif Atlas
- Homologous match to J4_8C3A_003
- Geometric discrepancy: 0.4724
- The information below is about J4_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8I9Y|1|C1|C|1433
8I9Y|1|C1|A|1434
8I9Y|1|C1|A|1435
8I9Y|1|C1|A|1436
8I9Y|1|C1|U|1437
8I9Y|1|C1|A|1438
8I9Y|1|C1|C|1439
*
8I9Y|1|C1|G|1457
8I9Y|1|C1|G|1458
*
8I9Y|1|C1|U|1856
8I9Y|1|C1|G|1857
8I9Y|1|C1|A|1858
8I9Y|1|C1|U|1859
*
8I9Y|1|C1|A|2314
8I9Y|1|C1|G|2315
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain LP
- 60S ribosomal protein l17-like protein
- Chain LR
- Ribosomal protein L19
- Chain Ld
- Putative 60S ribosomal protein
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