J4_8IE3_011

3D structure

PDB id

8IE3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGA(A2M)C

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8IE3_011 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.17

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

8IE3|1|2|G|3634
8IE3|1|2|A|3635
8IE3|1|2|C|3636
8IE3|1|2|U|3637
8IE3|1|2|G|3638
*
8IE3|1|2|C|3650
8IE3|1|2|A|3651
8IE3|1|2|A|3652
8IE3|1|2|A|3653
8IE3|1|2|G|3654
*
8IE3|1|2|U|3690
8IE3|1|2|G|3691
8IE3|1|2|A|3692
8IE3|1|2|U|3693
8IE3|1|2|U|3694
*
8IE3|1|2|A|3821
8IE3|1|2|U|3822
8IE3|1|2|G|3823
8IE3|1|2|A|3824
8IE3|1|2|A2M|3825
8IE3|1|2|C|3826

Current chains

Chain 2

28S rRNA

Nearby chains

Chain A

G Protein Nucleolar 2

Chain X

60S ribosomal protein L37a

Chain m

60S ribosomal protein L8