J4_8IFB_003

3D structure

PDB id

8IFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8IFB|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8IFB_003 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1289

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8IFB|1|A|G|115
8IFB|1|A|A|116
8IFB|1|A|G|117
8IFB|1|A|U|118
8IFB|1|A|A|119
8IFB|1|A|A|120
8IFB|1|A|U|121
8IFB|1|A|G|122
*
8IFB|1|A|U|239
8IFB|1|A|G|240
*
8IFB|1|A|C|286
8IFB|1|A|U|287
8IFB|1|A|A|288
8IFB|1|A|G|289
*
8IFB|1|A|C|311
8IFB|1|A|C|312

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17