J4_8IFB_004

3D structure

PDB id

8IFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8IFB|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8IFB_004 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1333

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8IFB|1|A|G|142
8IFB|1|A|A|143
8IFB|1|A|G|144
*
8IFB|1|A|C|178
8IFB|1|A|A|179
8IFB|1|A|U|180
8IFB|1|A|A|181
8IFB|1|A|A|182
8IFB|1|A|C|183
8IFB|1|A|G|184
*
8IFB|1|A|C|193
8IFB|1|A|C|194
8IFB|1|A|A|195
8IFB|1|A|A|196
8IFB|1|A|A|197
8IFB|1|A|G|198
*
8IFB|1|A|U|219
8IFB|1|A|G|220
8IFB|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20