J4_8IFB_006

3D structure

PDB id

8IFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8IFB|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8IFB_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.139

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8IFB|1|a|C|268
8IFB|1|a|C|269
*
8IFB|1|a|G|370
8IFB|1|a|A|371
8IFB|1|a|G|372
8IFB|1|a|U|373
8IFB|1|a|A|374
8IFB|1|a|G|375
*
8IFB|1|a|U|399
8IFB|1|a|G|400
8IFB|1|a|A|401
8IFB|1|a|A|402
8IFB|1|a|U|403
8IFB|1|a|A|404
8IFB|1|a|U|405
8IFB|1|a|G|406
*
8IFB|1|a|C|421
8IFB|1|a|A|422
8IFB|1|a|A|423
8IFB|1|a|G|424

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28