J4_8IFC_003

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8IFC|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8IFC_003 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1044

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8IFC|1|A|G|115
8IFC|1|A|A|116
8IFC|1|A|G|117
8IFC|1|A|U|118
8IFC|1|A|A|119
8IFC|1|A|A|120
8IFC|1|A|U|121
8IFC|1|A|G|122
*
8IFC|1|A|U|239
8IFC|1|A|G|240
*
8IFC|1|A|C|286
8IFC|1|A|U|287
8IFC|1|A|A|288
8IFC|1|A|G|289
*
8IFC|1|A|C|311
8IFC|1|A|C|312

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17