J4_8IFC_004

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8IFC|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8IFC_004 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1337

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8IFC|1|A|G|142
8IFC|1|A|A|143
8IFC|1|A|G|144
*
8IFC|1|A|C|178
8IFC|1|A|A|179
8IFC|1|A|U|180
8IFC|1|A|A|181
8IFC|1|A|A|182
8IFC|1|A|C|183
8IFC|1|A|G|184
*
8IFC|1|A|C|193
8IFC|1|A|C|194
8IFC|1|A|A|195
8IFC|1|A|A|196
8IFC|1|A|A|197
8IFC|1|A|G|198
*
8IFC|1|A|U|219
8IFC|1|A|G|220
8IFC|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20