J4_8IFC_006
3D structure
- PDB id
- 8IFC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Arbekacin-bound E.coli 70S ribosome in the PURE system
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CC*GAGUAG*UGAAUAUG*CAAG
- Length
- 20 nucleotides
- Bulged bases
- 8IFC|1|a|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8IFC_006 not in the Motif Atlas
- Homologous match to J4_5J7L_018
- Geometric discrepancy: 0.1334
- The information below is about J4_5J7L_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8IFC|1|a|C|268
8IFC|1|a|C|269
*
8IFC|1|a|G|370
8IFC|1|a|A|371
8IFC|1|a|G|372
8IFC|1|a|U|373
8IFC|1|a|A|374
8IFC|1|a|G|375
*
8IFC|1|a|U|399
8IFC|1|a|G|400
8IFC|1|a|A|401
8IFC|1|a|A|402
8IFC|1|a|U|403
8IFC|1|a|A|404
8IFC|1|a|U|405
8IFC|1|a|G|406
*
8IFC|1|a|C|421
8IFC|1|a|A|422
8IFC|1|a|A|423
8IFC|1|a|G|424
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain h
- 50S ribosomal protein L9
- Chain w
- 50S ribosomal protein L28
Coloring options: