J4_8IFE_011
3D structure
- PDB id
- 8IFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Arbekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- GUAA*UC*GUG*CGCC
- Length
- 13 nucleotides
- Bulged bases
- 8IFE|1|1A|U|4677
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8IFE_011 not in the Motif Atlas
- Homologous match to J4_8GLP_013
- Geometric discrepancy: 0.0594
- The information below is about J4_8GLP_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69783.1
- Basepair signature
- cWW-F-F-F-F-cWW-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8IFE|1|1A|G|4587
8IFE|1|1A|U|4588
8IFE|1|1A|A|4589
8IFE|1|1A|A|4590
*
8IFE|1|1A|U|4620
8IFE|1|1A|C|4621
*
8IFE|1|1A|G|4676
8IFE|1|1A|U|4677
8IFE|1|1A|G|4678
*
8IFE|1|1A|C|4712
8IFE|1|1A|G|4713
8IFE|1|1A|C|4714
8IFE|1|1A|C|4715
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1E
- 60S ribosomal protein L3
- Chain 2I
- 60S ribosomal protein L13a
- Chain 2P
- 60S ribosomal protein L23
Coloring options: