3D structure

PDB id
8INE (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State G'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGUUC*GGUCAG*UC*GGCCGUAC
Length
21 nucleotides
Bulged bases
8INE|1|2|C|2437
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8INE_005 not in the Motif Atlas
Homologous match to J4_8C3A_004
Geometric discrepancy: 0.1384
The information below is about J4_8C3A_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8INE|1|2|G|2406
8INE|1|2|G|2407
8INE|1|2|U|2408
8INE|1|2|U|2409
8INE|1|2|C|2410
*
8INE|1|2|G|2434
8INE|1|2|G|2435
8INE|1|2|U|2436
8INE|1|2|C|2437
8INE|1|2|A|2438
8INE|1|2|G|2439
*
8INE|1|2|U|2538
8INE|1|2|C|2539
*
8INE|1|2|G|2777
8INE|1|2|G|2778
8INE|1|2|C|2779
8INE|1|2|C|2780
8INE|1|2|G|2781
8INE|1|2|U|2782
8INE|1|2|A|2783
8INE|1|2|C|2784

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 4
GTP-binding protein 4
Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain F
60S ribosomal protein L34
Chain M
60S ribosomal protein L37
Chain O
60S ribosomal protein L38
Chain P
60S ribosomal protein L39
Chain a
60S ribosomal protein L19
Chain g
60S ribosomal protein L23a
Chain v
Pescadillo homolog

Coloring options:


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