J4_8IP8_003

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAAUAU*AG*CAAU*AG

Length

15 nucleotides

Bulged bases

8IP8|1|RB|A|1455, 8IP8|1|RB|U|1458

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8IP8_003 not in the Motif Atlas

Homologous match to J4_8P9A_014

Geometric discrepancy: 0.1618

The information below is about J4_8P9A_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_34212.1

Basepair signature

cWW-F-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8IP8|1|RB|C|1454
8IP8|1|RB|A|1455
8IP8|1|RB|A|1456
8IP8|1|RB|A|1457
8IP8|1|RB|U|1458
8IP8|1|RB|A|1459
8IP8|1|RB|U|1460
*
8IP8|1|RB|A|1478
8IP8|1|RB|G|1479
*
8IP8|1|RB|C|1873
8IP8|1|RB|A|1874
8IP8|1|RB|A|1875
8IP8|1|RB|U|1876
*
8IP8|1|RB|A|2345
8IP8|1|RB|G|2346

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein eL19

Chain MA

60S ribosomal protein uL22

Chain SA

60S ribosomal protein eL31