J4_8IP8_005

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8IP8_005 not in the Motif Atlas

Homologous match to J4_8P9A_016

Geometric discrepancy: 0.2082

The information below is about J4_8P9A_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8IP8|1|RB|G|1671
8IP8|1|RB|G|1672
*
8IP8|1|RB|C|1690
8IP8|1|RB|U|1691
*
8IP8|1|RB|A|1750
8IP8|1|RB|G|1751
*
8IP8|1|RB|U|1768
8IP8|1|RB|C|1769

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein eL19

Chain NB

60S ribosomal protein eL38

Chain PB

60S ribosomal protein eL34

Chain ZA

60S ribosomal protein eL22