J4_8IP8_007
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8IP8|1|RB|U|2307
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8IP8_007 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.0805
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IP8|1|RB|C|2185
8IP8|1|RB|U|2186
8IP8|1|RB|G|2187
*
8IP8|1|RB|C|2241
8IP8|1|RB|G|2242
*
8IP8|1|RB|C|2260
8IP8|1|RB|U|2261
8IP8|1|RB|U|2262
8IP8|1|RB|A|2263
8IP8|1|RB|A|2264
8IP8|1|RB|G|2265
8IP8|1|RB|G|2266
8IP8|1|RB|U|2267
8IP8|1|RB|A|2268
8IP8|1|RB|G|2269
*
8IP8|1|RB|U|2303
8IP8|1|RB|G|2304
8IP8|1|RB|A|2305
8IP8|1|RB|A|2306
8IP8|1|RB|U|2307
8IP8|1|RB|G|2308
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain DA
- 60S ribosomal protein uL2
- Chain IB
- 60S ribosomal protein eL41
- Chain aa
- Small subunit ribosomal RNA; SSU rRNA
- Chain cl
- Transfer RNA; tRNA
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