J4_8IP8_009
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 8IP8|1|RB|A|2654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8IP8_009 not in the Motif Atlas
- Homologous match to J4_8C3A_008
- Geometric discrepancy: 0.0966
- The information below is about J4_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IP8|1|RB|C|2651
8IP8|1|RB|U|2652
8IP8|1|RB|A|2653
8IP8|1|RB|A|2654
8IP8|1|RB|G|2655
*
8IP8|1|RB|U|2709
8IP8|1|RB|U|2710
8IP8|1|RB|G|2711
8IP8|1|RB|A|2712
8IP8|1|RB|U|2713
*
8IP8|1|RB|A|2737
8IP8|1|RB|C|2738
8IP8|1|RB|C|2739
*
8IP8|1|RB|G|2748
8IP8|1|RB|U|2749
8IP8|1|RB|G|2750
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain BA
- 60S ribosomal protein eL21
- Chain KA
- 60S ribosomal protein uL18
- Chain OB
- 60S ribosomal protein eL29
- Chain WA
- 60S ribosomal protein eL42
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