J4_8IP8_013
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GU(1MG)(2MG)*U(2MG)G*CAG(G7M)(H2U)(5MC)(5MC)*GC
- Length
- 16 nucleotides
- Bulged bases
- 8IP8|1|cl|U|8, 8IP8|1|cl|H2U|47, 8IP8|1|cl|5MC|48
- QA status
- Modified nucleotides: 1MG, 2MG, G7M, H2U, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8IP8_013 not in the Motif Atlas
- Homologous match to J4_8VU0_001
- Geometric discrepancy: 0.1942
- The information below is about J4_8VU0_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
8IP8|1|cl|G|7
8IP8|1|cl|U|8
8IP8|1|cl|1MG|9
8IP8|1|cl|2MG|10
*
8IP8|1|cl|U|25
8IP8|1|cl|2MG|26
8IP8|1|cl|G|27
*
8IP8|1|cl|C|43
8IP8|1|cl|A|44
8IP8|1|cl|G|45
8IP8|1|cl|G7M|46
8IP8|1|cl|H2U|47
8IP8|1|cl|5MC|48
8IP8|1|cl|5MC|49
*
8IP8|1|cl|G|65
8IP8|1|cl|C|66
Current chains
- Chain cl
- tRNAi
Nearby chains
- Chain HB
- 60S ribosomal protein uL16
- Chain RB
- Large subunit ribosomal RNA; LSU rRNA
- Chain aa
- Small subunit ribosomal RNA; SSU rRNA
- Chain bl
- eukaryotic release factor 1
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