J4_8IPD_001
3D structure
- PDB id
- 8IPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCG*UAAG
- Length
- 19 nucleotides
- Bulged bases
- 8IPD|1|2|C|309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8IPD_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1457
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8IPD|1|2|C|111
8IPD|1|2|C|112
*
8IPD|1|2|G|278
8IPD|1|2|A|279
8IPD|1|2|G|280
8IPD|1|2|U|281
8IPD|1|2|C|282
8IPD|1|2|G|283
*
8IPD|1|2|C|304
8IPD|1|2|A|305
8IPD|1|2|A|306
8IPD|1|2|A|307
8IPD|1|2|G|308
8IPD|1|2|C|309
8IPD|1|2|G|310
*
8IPD|1|2|U|327
8IPD|1|2|A|328
8IPD|1|2|A|329
8IPD|1|2|G|330
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain H
- 60S ribosomal protein L35
- Chain K
- 60S ribosomal protein L36
- Chain Q
- 60S ribosomal protein L13
- Chain U
- 60S ribosomal protein L15
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