J4_8IPX_002

3D structure

PDB id

8IPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C'

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPX|1|2|C|196
8IPX|1|2|A|197
8IPX|1|2|A|198
8IPX|1|2|G|199
*
8IPX|1|2|C|215
8IPX|1|2|C|216
8IPX|1|2|C|217
8IPX|1|2|A|218
8IPX|1|2|G|219
8IPX|1|2|C|220
8IPX|1|2|C|221
8IPX|1|2|C|222
*
8IPX|1|2|G|226
8IPX|1|2|A|227
8IPX|1|2|C|228
*
8IPX|1|2|G|240
8IPX|1|2|G|241
8IPX|1|2|U|242
8IPX|1|2|A|243
8IPX|1|2|G|244

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain h

60S ribosomal protein L26