J4_8IPY_004

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

(OMC)AAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

8IPY|1|2|A|2366, 8IPY|1|2|U|2369, 8IPY|1|2|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPY|1|2|OMC|2365
8IPY|1|2|A|2366
8IPY|1|2|A|2367
8IPY|1|2|A|2368
8IPY|1|2|U|2369
8IPY|1|2|A|2370
8IPY|1|2|U|2371
*
8IPY|1|2|A|2389
8IPY|1|2|G|2390
8IPY|1|2|G|2391
*
8IPY|1|2|C|2824
8IPY|1|2|A|2825
8IPY|1|2|U|2826
8IPY|1|2|G|2827
8IPY|1|2|U|2828
8IPY|1|2|U|2829
*
8IPY|1|2|A|3856
8IPY|1|2|G|3857

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain 9

Zinc finger protein 593

Chain Y

60S ribosomal protein L17

Chain a

60S ribosomal protein L19

Chain j

60S ribosomal protein L31