J4_8IPY_005
3D structure
- PDB id
- 8IPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8IPY|1|2|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8IPY_005 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.1426
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IPY|1|2|G|2406
8IPY|1|2|G|2407
8IPY|1|2|U|2408
8IPY|1|2|U|2409
8IPY|1|2|C|2410
*
8IPY|1|2|G|2434
8IPY|1|2|G|2435
8IPY|1|2|U|2436
8IPY|1|2|C|2437
8IPY|1|2|A|2438
8IPY|1|2|G|2439
*
8IPY|1|2|U|2538
8IPY|1|2|C|2539
*
8IPY|1|2|G|2777
8IPY|1|2|G|2778
8IPY|1|2|C|2779
8IPY|1|2|C|2780
8IPY|1|2|G|2781
8IPY|1|2|U|2782
8IPY|1|2|A|2783
8IPY|1|2|C|2784
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 4
- GTP-binding protein 4
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- 60S ribosomal protein L34
- Chain M
- 60S ribosomal protein L37
- Chain O
- 60S ribosomal protein L38
- Chain P
- 60S ribosomal protein L39
- Chain a
- 60S ribosomal protein L19
- Chain g
- 60S ribosomal protein L23a
- Chain q
- Pescadillo homolog
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