J4_8IR3_004

3D structure

PDB id

8IR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State B'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

(OMC)AAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

8IR3|1|2|A|2366, 8IR3|1|2|U|2369, 8IR3|1|2|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IR3|1|2|OMC|2365
8IR3|1|2|A|2366
8IR3|1|2|A|2367
8IR3|1|2|A|2368
8IR3|1|2|U|2369
8IR3|1|2|A|2370
8IR3|1|2|U|2371
*
8IR3|1|2|A|2389
8IR3|1|2|G|2390
8IR3|1|2|G|2391
*
8IR3|1|2|C|2824
8IR3|1|2|A|2825
8IR3|1|2|U|2826
8IR3|1|2|G|2827
8IR3|1|2|U|2828
8IR3|1|2|U|2829
*
8IR3|1|2|A|3856
8IR3|1|2|G|3857

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain 9

Zinc finger protein 593

Chain Y

60S ribosomal protein L17

Chain a

60S ribosomal protein L19

Chain j

60S ribosomal protein L31