J4_8J1Z_001

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8J1Z|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8J1Z_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1236

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8J1Z|1|a|C|268
8J1Z|1|a|C|269
*
8J1Z|1|a|G|370
8J1Z|1|a|A|371
8J1Z|1|a|G|372
8J1Z|1|a|U|373
8J1Z|1|a|A|374
8J1Z|1|a|G|375
*
8J1Z|1|a|U|399
8J1Z|1|a|G|400
8J1Z|1|a|A|401
8J1Z|1|a|A|402
8J1Z|1|a|U|403
8J1Z|1|a|A|404
8J1Z|1|a|U|405
8J1Z|1|a|G|406
*
8J1Z|1|a|C|421
8J1Z|1|a|A|422
8J1Z|1|a|A|423
8J1Z|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28