J4_8JDJ_014

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUAA*(OMU)C*GUG*CGCC

Length

13 nucleotides

Bulged bases

8JDJ|1|D|U|4677

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDJ|1|D|G|4587
8JDJ|1|D|U|4588
8JDJ|1|D|A|4589
8JDJ|1|D|A|4590
*
8JDJ|1|D|OMU|4620
8JDJ|1|D|C|4621
*
8JDJ|1|D|G|4676
8JDJ|1|D|U|4677
8JDJ|1|D|G|4678
*
8JDJ|1|D|C|4712
8JDJ|1|D|G|4713
8JDJ|1|D|C|4714
8JDJ|1|D|C|4715

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L3

Chain T

60S ribosomal protein L13a

Chain a

60S ribosomal protein L23