J4_8JDK_006

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

(OMC)AAAUAU*AGG*(OMC)AUGUU*AG

Length

18 nucleotides

Bulged bases

8JDK|1|D|A|2366, 8JDK|1|D|U|2369, 8JDK|1|D|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|D|OMC|2365
8JDK|1|D|A|2366
8JDK|1|D|A|2367
8JDK|1|D|A|2368
8JDK|1|D|U|2369
8JDK|1|D|A|2370
8JDK|1|D|U|2371
*
8JDK|1|D|A|2389
8JDK|1|D|G|2390
8JDK|1|D|G|2391
*
8JDK|1|D|OMC|2824
8JDK|1|D|A|2825
8JDK|1|D|U|2826
8JDK|1|D|G|2827
8JDK|1|D|U|2828
8JDK|1|D|U|2829
*
8JDK|1|D|A|3856
8JDK|1|D|G|3857

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain U

60S ribosomal protein L17

Chain W

60S ribosomal protein L19

Chain i

60S ribosomal protein L31