J4_8JDL_012

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GUAA*(OMU)C*GUG*CGCC

Length

13 nucleotides

Bulged bases

8JDL|1|D|U|4677

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDL|1|D|G|4587
8JDL|1|D|U|4588
8JDL|1|D|A|4589
8JDL|1|D|A|4590
*
8JDL|1|D|OMU|4620
8JDL|1|D|C|4621
*
8JDL|1|D|G|4676
8JDL|1|D|U|4677
8JDL|1|D|G|4678
*
8JDL|1|D|C|4712
8JDL|1|D|G|4713
8JDL|1|D|C|4714
8JDL|1|D|C|4715

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L3

Chain T

60S ribosomal protein L13a

Chain a

60S ribosomal protein L23