J4_8JSG_003
3D structure
- PDB id
- 8JSG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 30S-IF3 complex from Escherichia coli
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 8JSG|1|g|C|576, 8JSG|1|g|U|813, 8JSG|1|g|G|818, 8JSG|1|g|U|820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8JSG_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.2057
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8JSG|1|g|G|575
8JSG|1|g|C|576
8JSG|1|g|G|577
*
8JSG|1|g|C|764
8JSG|1|g|G|765
8JSG|1|g|A|766
8JSG|1|g|A|767
8JSG|1|g|A|768
8JSG|1|g|G|769
*
8JSG|1|g|C|810
8JSG|1|g|C|811
8JSG|1|g|G|812
8JSG|1|g|U|813
8JSG|1|g|A|814
8JSG|1|g|A|815
8JSG|1|g|A|816
8JSG|1|g|C|817
8JSG|1|g|G|818
8JSG|1|g|A|819
8JSG|1|g|U|820
8JSG|1|g|G|821
*
8JSG|1|g|C|879
8JSG|1|g|C|880
Current chains
- Chain g
- 16S ribosomal RNA
Nearby chains
- Chain 2
- Small ribosomal subunit protein bS21
- Chain P
- Small ribosomal subunit protein uS17
- Chain p
- Small ribosomal subunit protein uS8
- Chain t
- Small ribosomal subunit protein uS12
- Chain u
- Small ribosomal subunit protein uS15
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