J4_8K2B_001

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAUG*CU*AAAG*CAG

Length

13 nucleotides

Bulged bases

8K2B|1|L1|U|646, 8K2B|1|L1|A|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2B|1|L1|C|644
8K2B|1|L1|A|645
8K2B|1|L1|U|646
8K2B|1|L1|G|647
*
8K2B|1|L1|C|656
8K2B|1|L1|U|657
*
8K2B|1|L1|A|780
8K2B|1|L1|A|781
8K2B|1|L1|A|782
8K2B|1|L1|G|783
*
8K2B|1|L1|C|1001
8K2B|1|L1|A|1002
8K2B|1|L1|G|1003

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LQ

Large ribosomal subunit protein bL17m

Chain LV

39S ribosomal protein L22, mitochondrial

Chain Lf

Large ribosomal subunit protein bL32m

Chain Sf

Large ribosomal subunit protein mL65